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zopp2c protein structural domains  (InterPro Inc)

 
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    Structured Review

    InterPro Inc zopp2c protein structural domains
    Structural features of the ZoPP2Cs. A Multiple sequences alignment of <t>ZoPP2C</t> conserved domains. B 3D structural model of PP2C structural domains. C ZoPP2C sequence logos for conserved domains, generated using Jalview (v2.10.3). The height of the symbols within the stack indicates the relative frequency of each amino acid. Logos were created by comparing multiple ZoPP2C protein sequences
    Zopp2c Protein Structural Domains, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/zopp2c protein structural domains/product/InterPro Inc
    Average 90 stars, based on 1 article reviews
    zopp2c protein structural domains - by Bioz Stars, 2026-06
    90/100 stars

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    1) Product Images from "Genome-wide analysis and expression pattern of the ZoPP2C gene family in Zingiber officinale Roscoe"

    Article Title: Genome-wide analysis and expression pattern of the ZoPP2C gene family in Zingiber officinale Roscoe

    Journal: BMC Genomics

    doi: 10.1186/s12864-024-09966-w

    Structural features of the ZoPP2Cs. A Multiple sequences alignment of ZoPP2C conserved domains. B 3D structural model of PP2C structural domains. C ZoPP2C sequence logos for conserved domains, generated using Jalview (v2.10.3). The height of the symbols within the stack indicates the relative frequency of each amino acid. Logos were created by comparing multiple ZoPP2C protein sequences
    Figure Legend Snippet: Structural features of the ZoPP2Cs. A Multiple sequences alignment of ZoPP2C conserved domains. B 3D structural model of PP2C structural domains. C ZoPP2C sequence logos for conserved domains, generated using Jalview (v2.10.3). The height of the symbols within the stack indicates the relative frequency of each amino acid. Logos were created by comparing multiple ZoPP2C protein sequences

    Techniques Used: Sequencing, Generated

    Phylogenetic analysis of the PP2C genes. Phylogenetic trees for A. thaliana and ginger PP2C gene families were modelled using maximum likelihood (ML) and 1000 bootstrap replicates were selected. Bootstrap levels are indicated by different colored circles. Red stars specifically indicate the ginger ZoPP2C sequences
    Figure Legend Snippet: Phylogenetic analysis of the PP2C genes. Phylogenetic trees for A. thaliana and ginger PP2C gene families were modelled using maximum likelihood (ML) and 1000 bootstrap replicates were selected. Bootstrap levels are indicated by different colored circles. Red stars specifically indicate the ginger ZoPP2C sequences

    Techniques Used:

    Phylogenetic relationships and gene structure of the ZoPP2Cs. A The Motif pattern of ZoPP2Cs. The protein was comprised of motifs labelled 1–20 and featured in varied, colored boxes. Sequences for each motif can be found in Fig. S . Phylogenetic analysis was conducted on the complete sequence of the ginger ZoPP2C proteins using MEGA X software. B PP2C domains of ZoPP2Cs. The blue color represented the PP2C domain. C The exon–intron structures of ZoPP2Cs. Blue boxes indicated the 5' and 3' untranslated regions, while red boxes indicated the exons. Black lines represent the introns. The length of the protein can be estimated using the scale located at the bottom
    Figure Legend Snippet: Phylogenetic relationships and gene structure of the ZoPP2Cs. A The Motif pattern of ZoPP2Cs. The protein was comprised of motifs labelled 1–20 and featured in varied, colored boxes. Sequences for each motif can be found in Fig. S . Phylogenetic analysis was conducted on the complete sequence of the ginger ZoPP2C proteins using MEGA X software. B PP2C domains of ZoPP2Cs. The blue color represented the PP2C domain. C The exon–intron structures of ZoPP2Cs. Blue boxes indicated the 5' and 3' untranslated regions, while red boxes indicated the exons. Black lines represent the introns. The length of the protein can be estimated using the scale located at the bottom

    Techniques Used: Sequencing, Software

    Schematic diagram of ZoPP2Cs collinearity in ginger. The red lines indicated ZoPP2C gene pair duplications in ginger
    Figure Legend Snippet: Schematic diagram of ZoPP2Cs collinearity in ginger. The red lines indicated ZoPP2C gene pair duplications in ginger

    Techniques Used:

    Cis-regulatory elements of the ZoPP2C promoters. A Box plots of ZoPP2C promoters. Box plots depicted the expression levels of ZoPP2Cs during various growth stages under different stress conditions. B Heatmap of the ZoPP2C promoters. Heatmap displayed the number of cis-elements, whereby larger numbers were highlighted in red and smaller numbers in blue. Histograms exhibited the proportion of varied cis-elements, with diverse colors denoting distinct types of cis-elements
    Figure Legend Snippet: Cis-regulatory elements of the ZoPP2C promoters. A Box plots of ZoPP2C promoters. Box plots depicted the expression levels of ZoPP2Cs during various growth stages under different stress conditions. B Heatmap of the ZoPP2C promoters. Heatmap displayed the number of cis-elements, whereby larger numbers were highlighted in red and smaller numbers in blue. Histograms exhibited the proportion of varied cis-elements, with diverse colors denoting distinct types of cis-elements

    Techniques Used: Expressing

    Expression profiles of ZoPP2C gene family. Hierarchical clustering analysis was conducted on the expression profiles of the ZoPP2Cs across 15 ginger samples collected from various tissues and different developmental stages. Normalized values (log2FPKM) were used to represent the expression patterns by color gradient, ranging from blue (negative expression level) to red (positive expression level). Different groups represent G: root, R1-R5: five developmental stages of ginger, S: stem, S90: 90d ginger stem, R90: 90d ginger root, L90: 90d ginger leaf, Rh90: 90d ginger rhizome, RO: red outer epidermis of ginger, RI: red outer epidermal inner tissues of stem, Ye: yellow rhizome, Gr: green rhizome
    Figure Legend Snippet: Expression profiles of ZoPP2C gene family. Hierarchical clustering analysis was conducted on the expression profiles of the ZoPP2Cs across 15 ginger samples collected from various tissues and different developmental stages. Normalized values (log2FPKM) were used to represent the expression patterns by color gradient, ranging from blue (negative expression level) to red (positive expression level). Different groups represent G: root, R1-R5: five developmental stages of ginger, S: stem, S90: 90d ginger stem, R90: 90d ginger root, L90: 90d ginger leaf, Rh90: 90d ginger rhizome, RO: red outer epidermis of ginger, RI: red outer epidermal inner tissues of stem, Ye: yellow rhizome, Gr: green rhizome

    Techniques Used: Expressing

    Relative expression levels of 12 selected ZoPP2C genes under chilling treatment by qRT-PCR. Blue color represents the gene expression profile in ginger leaves. Red color represents the expression profile in ginger rhizomes. The four treatments were 26°C, 10°C, 2°C, and 2°C + melatonin (LT + MT). Error bars represent the standard deviation of three independent biological replicates
    Figure Legend Snippet: Relative expression levels of 12 selected ZoPP2C genes under chilling treatment by qRT-PCR. Blue color represents the gene expression profile in ginger leaves. Red color represents the expression profile in ginger rhizomes. The four treatments were 26°C, 10°C, 2°C, and 2°C + melatonin (LT + MT). Error bars represent the standard deviation of three independent biological replicates

    Techniques Used: Expressing, Quantitative RT-PCR, Gene Expression, Standard Deviation



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    zopp2c protein structural domains  (InterPro Inc)
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    InterPro Inc zopp2c protein structural domains
    Structural features of the ZoPP2Cs. A Multiple sequences alignment of <t>ZoPP2C</t> conserved domains. B 3D structural model of PP2C structural domains. C ZoPP2C sequence logos for conserved domains, generated using Jalview (v2.10.3). The height of the symbols within the stack indicates the relative frequency of each amino acid. Logos were created by comparing multiple ZoPP2C protein sequences
    Zopp2c Protein Structural Domains, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/zopp2c protein structural domains/product/InterPro Inc
    Average 90 stars, based on 1 article reviews
    zopp2c protein structural domains - by Bioz Stars, 2026-06
    90/100 stars
    		  Buy from Supplier

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    Structural features of the ZoPP2Cs. A Multiple sequences alignment of ZoPP2C conserved domains. B 3D structural model of PP2C structural domains. C ZoPP2C sequence logos for conserved domains, generated using Jalview (v2.10.3). The height of the symbols within the stack indicates the relative frequency of each amino acid. Logos were created by comparing multiple ZoPP2C protein sequences

    Journal: BMC Genomics

    Article Title: Genome-wide analysis and expression pattern of the ZoPP2C gene family in Zingiber officinale Roscoe

    doi: 10.1186/s12864-024-09966-w

    Figure Lengend Snippet: Structural features of the ZoPP2Cs. A Multiple sequences alignment of ZoPP2C conserved domains. B 3D structural model of PP2C structural domains. C ZoPP2C sequence logos for conserved domains, generated using Jalview (v2.10.3). The height of the symbols within the stack indicates the relative frequency of each amino acid. Logos were created by comparing multiple ZoPP2C protein sequences

    Article Snippet: According to the Interpro ( https://www.ebi.ac.uk/interpro/ ) analysis, four major ZoPP2C protein structural domains including PPM-type phosphatase-like domain, PP2Cc, PP2C-SIG, PP2C_like were identified in 97 ZoPP2Cs’ amino acids.

    Techniques: Sequencing, Generated

    Phylogenetic analysis of the PP2C genes. Phylogenetic trees for A. thaliana and ginger PP2C gene families were modelled using maximum likelihood (ML) and 1000 bootstrap replicates were selected. Bootstrap levels are indicated by different colored circles. Red stars specifically indicate the ginger ZoPP2C sequences

    Journal: BMC Genomics

    Article Title: Genome-wide analysis and expression pattern of the ZoPP2C gene family in Zingiber officinale Roscoe

    doi: 10.1186/s12864-024-09966-w

    Figure Lengend Snippet: Phylogenetic analysis of the PP2C genes. Phylogenetic trees for A. thaliana and ginger PP2C gene families were modelled using maximum likelihood (ML) and 1000 bootstrap replicates were selected. Bootstrap levels are indicated by different colored circles. Red stars specifically indicate the ginger ZoPP2C sequences

    Article Snippet: According to the Interpro ( https://www.ebi.ac.uk/interpro/ ) analysis, four major ZoPP2C protein structural domains including PPM-type phosphatase-like domain, PP2Cc, PP2C-SIG, PP2C_like were identified in 97 ZoPP2Cs’ amino acids.

    Techniques:

    Phylogenetic relationships and gene structure of the ZoPP2Cs. A The Motif pattern of ZoPP2Cs. The protein was comprised of motifs labelled 1–20 and featured in varied, colored boxes. Sequences for each motif can be found in Fig. S . Phylogenetic analysis was conducted on the complete sequence of the ginger ZoPP2C proteins using MEGA X software. B PP2C domains of ZoPP2Cs. The blue color represented the PP2C domain. C The exon–intron structures of ZoPP2Cs. Blue boxes indicated the 5' and 3' untranslated regions, while red boxes indicated the exons. Black lines represent the introns. The length of the protein can be estimated using the scale located at the bottom

    Journal: BMC Genomics

    Article Title: Genome-wide analysis and expression pattern of the ZoPP2C gene family in Zingiber officinale Roscoe

    doi: 10.1186/s12864-024-09966-w

    Figure Lengend Snippet: Phylogenetic relationships and gene structure of the ZoPP2Cs. A The Motif pattern of ZoPP2Cs. The protein was comprised of motifs labelled 1–20 and featured in varied, colored boxes. Sequences for each motif can be found in Fig. S . Phylogenetic analysis was conducted on the complete sequence of the ginger ZoPP2C proteins using MEGA X software. B PP2C domains of ZoPP2Cs. The blue color represented the PP2C domain. C The exon–intron structures of ZoPP2Cs. Blue boxes indicated the 5' and 3' untranslated regions, while red boxes indicated the exons. Black lines represent the introns. The length of the protein can be estimated using the scale located at the bottom

    Article Snippet: According to the Interpro ( https://www.ebi.ac.uk/interpro/ ) analysis, four major ZoPP2C protein structural domains including PPM-type phosphatase-like domain, PP2Cc, PP2C-SIG, PP2C_like were identified in 97 ZoPP2Cs’ amino acids.

    Techniques: Sequencing, Software

    Schematic diagram of ZoPP2Cs collinearity in ginger. The red lines indicated ZoPP2C gene pair duplications in ginger

    Journal: BMC Genomics

    Article Title: Genome-wide analysis and expression pattern of the ZoPP2C gene family in Zingiber officinale Roscoe

    doi: 10.1186/s12864-024-09966-w

    Figure Lengend Snippet: Schematic diagram of ZoPP2Cs collinearity in ginger. The red lines indicated ZoPP2C gene pair duplications in ginger

    Article Snippet: According to the Interpro ( https://www.ebi.ac.uk/interpro/ ) analysis, four major ZoPP2C protein structural domains including PPM-type phosphatase-like domain, PP2Cc, PP2C-SIG, PP2C_like were identified in 97 ZoPP2Cs’ amino acids.

    Techniques:

    Cis-regulatory elements of the ZoPP2C promoters. A Box plots of ZoPP2C promoters. Box plots depicted the expression levels of ZoPP2Cs during various growth stages under different stress conditions. B Heatmap of the ZoPP2C promoters. Heatmap displayed the number of cis-elements, whereby larger numbers were highlighted in red and smaller numbers in blue. Histograms exhibited the proportion of varied cis-elements, with diverse colors denoting distinct types of cis-elements

    Journal: BMC Genomics

    Article Title: Genome-wide analysis and expression pattern of the ZoPP2C gene family in Zingiber officinale Roscoe

    doi: 10.1186/s12864-024-09966-w

    Figure Lengend Snippet: Cis-regulatory elements of the ZoPP2C promoters. A Box plots of ZoPP2C promoters. Box plots depicted the expression levels of ZoPP2Cs during various growth stages under different stress conditions. B Heatmap of the ZoPP2C promoters. Heatmap displayed the number of cis-elements, whereby larger numbers were highlighted in red and smaller numbers in blue. Histograms exhibited the proportion of varied cis-elements, with diverse colors denoting distinct types of cis-elements

    Article Snippet: According to the Interpro ( https://www.ebi.ac.uk/interpro/ ) analysis, four major ZoPP2C protein structural domains including PPM-type phosphatase-like domain, PP2Cc, PP2C-SIG, PP2C_like were identified in 97 ZoPP2Cs’ amino acids.

    Techniques: Expressing

    Expression profiles of ZoPP2C gene family. Hierarchical clustering analysis was conducted on the expression profiles of the ZoPP2Cs across 15 ginger samples collected from various tissues and different developmental stages. Normalized values (log2FPKM) were used to represent the expression patterns by color gradient, ranging from blue (negative expression level) to red (positive expression level). Different groups represent G: root, R1-R5: five developmental stages of ginger, S: stem, S90: 90d ginger stem, R90: 90d ginger root, L90: 90d ginger leaf, Rh90: 90d ginger rhizome, RO: red outer epidermis of ginger, RI: red outer epidermal inner tissues of stem, Ye: yellow rhizome, Gr: green rhizome

    Journal: BMC Genomics

    Article Title: Genome-wide analysis and expression pattern of the ZoPP2C gene family in Zingiber officinale Roscoe

    doi: 10.1186/s12864-024-09966-w

    Figure Lengend Snippet: Expression profiles of ZoPP2C gene family. Hierarchical clustering analysis was conducted on the expression profiles of the ZoPP2Cs across 15 ginger samples collected from various tissues and different developmental stages. Normalized values (log2FPKM) were used to represent the expression patterns by color gradient, ranging from blue (negative expression level) to red (positive expression level). Different groups represent G: root, R1-R5: five developmental stages of ginger, S: stem, S90: 90d ginger stem, R90: 90d ginger root, L90: 90d ginger leaf, Rh90: 90d ginger rhizome, RO: red outer epidermis of ginger, RI: red outer epidermal inner tissues of stem, Ye: yellow rhizome, Gr: green rhizome

    Article Snippet: According to the Interpro ( https://www.ebi.ac.uk/interpro/ ) analysis, four major ZoPP2C protein structural domains including PPM-type phosphatase-like domain, PP2Cc, PP2C-SIG, PP2C_like were identified in 97 ZoPP2Cs’ amino acids.

    Techniques: Expressing

    Relative expression levels of 12 selected ZoPP2C genes under chilling treatment by qRT-PCR. Blue color represents the gene expression profile in ginger leaves. Red color represents the expression profile in ginger rhizomes. The four treatments were 26°C, 10°C, 2°C, and 2°C + melatonin (LT + MT). Error bars represent the standard deviation of three independent biological replicates

    Journal: BMC Genomics

    Article Title: Genome-wide analysis and expression pattern of the ZoPP2C gene family in Zingiber officinale Roscoe

    doi: 10.1186/s12864-024-09966-w

    Figure Lengend Snippet: Relative expression levels of 12 selected ZoPP2C genes under chilling treatment by qRT-PCR. Blue color represents the gene expression profile in ginger leaves. Red color represents the expression profile in ginger rhizomes. The four treatments were 26°C, 10°C, 2°C, and 2°C + melatonin (LT + MT). Error bars represent the standard deviation of three independent biological replicates

    Article Snippet: According to the Interpro ( https://www.ebi.ac.uk/interpro/ ) analysis, four major ZoPP2C protein structural domains including PPM-type phosphatase-like domain, PP2Cc, PP2C-SIG, PP2C_like were identified in 97 ZoPP2Cs’ amino acids.

    Techniques: Expressing, Quantitative RT-PCR, Gene Expression, Standard Deviation